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Heats of Formation of Medium-Sized Organic Compounds from Contemporary Electronic Structure Methods

Computational electronic structure calculations are routinely undertaken to predict thermodynamic properties of various species. However, the application of highly accurate wave function theory methods, such as the “gold standard” coupled cluster approach including single, double, and partly triple excitations in perturbative fashion, CCSD(T), to large molecules is limited due to high computational cost. In this work, the promising domain based local pair natural orbital coupled cluster approach, DLPNO-CCSD(T), has been tested to reproduce 113 accurate formation enthalpies of medium-sized molecules (few dozens heavy atoms) important for bio- and combustion chemistry via the reaction based Feller-Peterson-Dixon approach. For comparison, eight density functional theory (B3LYP, B3LYP-D3, PBE0, PBE0-D3, M06, M06-2X, omegaB97X-D3, and omegaB97M-V) and MP2-based (B2PLYP-D3, PWPB95-D3, B2T-PLYP, B2T-PLYP-D, B2GP-PLYP, DSD-PBEP86-D3, SCS-MP2, and OO-SCS-MP2) methods have been tested. The worst performance has been obtained for the standard hybrid DFT functionals, PBE0 (mean unsigned error (MUE)/mean signed error (MSE) = 9.1/6.0 kcal/mol) and B3LYP (MUE/MSE = 13.5/-13.3 kcal/mol). The influence of an empirical dispersion correction term on these functionals’ performance is not homogeneous: B3LYP performance is improved (B3LYP-D3 (MUE/MSE = 6.0/0.8 kcal/mol)); meanwhile PBE0 performance is worse (PBE0-D3 (MUE/MSE = 14.1/13.6 kcal/mol)). The Minnesota functionals, M06 (MUE/MSE = 3.8/-2.0 kcal/mol) and M06-2X (MUE/MSE = 3.5/3.0 kcal/mol), and recently developed omegaB97X-D3 (MUE/MSE = 3.2/0.2 kcal/mol) and omegaB97M-V (MUE/MSE = 2.2/1.3 kcal/mol) methods provided significantly better formation enthalpies. Enthalpies of similar quality can also be obtained from some double hybrid methods (B2PLYP-D3 (MUE/MSE = 4.7/2.0 kcal/mol), PWPB95-D3 (MUE/MSE = 4.3/3.2 kcal/mol), B2T-PLYP (MUE/MSE = 4.1/-3.0 kcal/mol), and B2T-PLYP-D (MUE/MSE = 3.3/1.7 kcal/mol)). The two spin component scaled (SCS) MP2 methods resulted in even smaller errors (SCS-MP2 (MUE/MSE = 1.9/1.2 kcal/mol) and OO-SCS-MP2 (MUE/MSE = 1.6/0.1 kcal/mol)). The best performance was found for the frozen core (FC) DLPNO-CCSD(T) method with a MUE/MSE of 1.6/-1.2 kcal/mol. The performance of the DLPNO-CCSD(T) method can be further improved by running the post-SCF calculations on the B3LYP orbitals: the MUE/MSE for the DLPNO-CCSD(T,B3LYP) approximation is 1.2/-0.4 kcal/mol. We recommend the DLPNO-CCSD(T,B3LYP) method for black box applications in thermodynamics of medium-sized organic molecules when the canonical CCSD(T) calculations with basis sets of reasonable quality are prohibitively expensive.

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Isoxazole – Wikipedia,
Isoxazole | C3H3NO – PubChem

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Regiospecific synthesis, anti-inflammatory and anticancer evaluation of novel 3,5-disubstituted isoxazoles from the natural maslinic and oleanolic acids

Maslinic acid (1) and oleanolic acid (2) were isolated from Olea europaea L. under ultra-sonication conditions with large amounts (8.5 and 3.4 mg/g DW, respectively). Copper-catalyzed microwave-assisted 1,3-dipolar cycloaddition reactions between natural pentacyclic triterpenoid-alkyne derivatives and a series of aryl nitrile oxides, regiospecifically afforded 3,5-disubstituted isoxazoles in quantitative yields. The reaction times were shorter than those reported in the literature. Most of the compounds were evaluated for their anti-inflammatory and anti-proliferative activities. Compounds 12c, 12e, 12g, 13c and 13d found to have higher anti-inflammatory activity. The anti-proliferative evaluation towards EMT-6 and SW480 cancer cell lines indicated that most of the compounds exhibited significant anti-cancer activity. Among all triterpenic derivatives, isoxazole 12g bearing a furfuryl ring in its isoxazole moiety was found to have highest anti-inflammatory and anti-cancer activity. Therefore, this derivative can serve as a promising lead candidate for further study.

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Isoxazole – Wikipedia,
Isoxazole | C3H3NO – PubChem

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Structural trends among second-generation voltage-gated sodium channel blockers

The chapter examines the second-generation voltage-gated sodium (Na v) channel blockers and patent applications of the past decade and highlights structural trends by clustering compounds with similar structures. The term ‘second generation’ refers to compounds identified in the search for Nav subtype selectivity, as opposed to compounds whose Nav activity was characterized subsequent to their use in the clinic. Na v channels are transmembrane proteins that control the flow of sodium ions across cell membranes. They are important regulators of cellular excitability, contributing to the initiation and propagation of action potentials in neurons, heart and muscle. The term ‘structural trends’ refers to two-dimensional substructure motifs shared between compounds. This chapter discusses small-molecule Nav channel blockers. Blockers act as channel modulators, stabilizing one of the non-conducting states. An examination of structural trends among Nav channel blockers showed that the structure-activity relationships (SAR) are subtle and unpredictable. Small structural changes switch the selectivity between TTX-sensitive and TTX-resistant members, however these changes are often highly scaffold specific. Further developments in understanding the fine structure of Nav channels will help to rationalize these findings and facilitate the next round of drug design for these clinically important targets.

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Isoxazole – Wikipedia,
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Design, synthesis, spectral, antibacterial activities and quantum chemical calculations of new Cu (II) complexes of heterocyclic ligands

New Cu (II) complexes were obtained by reaction of Cu (II) cation with new heterocyclic Schiff base ligands derived from benzo[1,2-c]isoxazoles. The ligands and their Cu (II) complexes were characterized by elemental analyses, IR, mass, and NMR spectra. The optical properties of the compounds were also investigated by UV?Vis and fluorescence spectroscopy. The DFT methods were employed to achieve deeper insight into geometry, spectral properties and energy difference between the frontier orbitals of the ligands and their Cu (II) complexes. The DFT-calculated spectral properties are in good agreement with the experimental values, confirming suitability of the optimized geometries for Cu (II) complexes. In addition, the new ligands and their Cu (II) complexes demonstrated potent antibacterial activity against a panel of strains of Gram negative bacterial and Gram positive species and their MIC was also determined. The results revealed that Cu (II) complexes, displayed greater antibacterial activity against Gram-negative and Gram positive bacteria than did the well known antibacterial agent Sulfamethoxazole.

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Isoxazole – Wikipedia,
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Heteroaromatic compounds and crop protection agents containing them

Heteroaromatic compounds of the formulae IA and IB STR1 where the dashed line is a double bond between the carbon atom and a Z atom, and the index and the substituents have the following meanings: R1 alkyl, alkoxy, alkylamino R2 alkyl; A a direct bond; alkylene, alkenylene, alkynylene; O, S, S-oxides, N and alkylene derivatives or oxime radicals thereof B hydrogen, halogen, alkyl, alkenyl, alkynyl; cycloalkyl, cycloalkenyl, cycloalkynyl, heterocyclyl, aryl, hetaryl U CH2, CHCl, CHR2 or NOR2 ; X hydrogen, cyano, nitro, halogen, alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, heterocyclyl, aryl, hetaryl; oxi- and thio derivatives thereof, carbonyl derivatives thereof, carbonyloxy derivatives thereof, amino derivatives thereof, oxime derivatives thereof, amino which may bear one or two of the abovementioned groups; m 1 or 2, Y oxygen or sulfur; Z1 -Z2, Z3 -Z4, together with the carbon atom to which they are bonded, are the radical of a heteroaromatic, and fungicides containing these compounds.

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Isoxazole – Wikipedia,
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New Anti-Inflammatory Hybrid N-Acyl Hydrazone-Linked Isoxazole Derivatives as COX-2 Inhibitors:Rational Design, Synthesis and Biological Evaluation

Selectivity of a drug becomes a major problem in the treatment of a clinical disease and many nonsteroidal anti-inflammatory drugs (NSAID’s) are classic examples of this conundrum. In the present study, we designed a set of hybrid compounds (11 a-p, 12 a-i) that compose new N-acyl hydrazones (NAH) linked with isoxazoles, using rational drug design approach. The binding affinities of newly designed compounds were calculated and compared with known non anti-inflammatory NAH and cyclooxygenase-2 (COX-2) inhibitors (coxibs) at the active sites of cyclooxygenase-1 (COX-1) and COX-2. The comparison revealed that the hybrid compounds bind with COX-2 active site in a fashion quite similar to known non anti-inflammatory compounds (4). Based on these findings, we further synthesized the compounds (11 a-p, 12 a-i) and subjected them to in vitro, in vivo anti-inflammatory studies. Compound 11 l (IC50=5.8 muM) and 12 c (IC50 = 4.1 muM) were found to be active COX-2 inhibitors. Compounds 12 a, 12 b and 12 e displayed COX-2 enzyme inhibition at lower micro molar concentrations. The compounds were also evaluated for antioxidant activity and compound 11 h exhibited an effective antioxidant activity when compared with ascorbic acid. Additionally, these compounds were screened for anti-bacterial activities and compound 11 l and 12 h were exhibited greater anti-bacterial activity against gram +ve and -ve than standards Ciprofloxacin and Flucloxacillin.

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Isoxazole – Wikipedia,
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A comprehensive overview of directing groups applied in metal-catalysed C-H functionalisation chemistry

The present review is devoted to summarizing the recent advances (2015-2017) in the field of metal-catalysed group-directed C-H functionalisation. In order to clearly showcase the molecular diversity that can now be accessed by means of directed C-H functionalisation, the whole is organized following the directing groups installed on a substrate. Its aim is to be a comprehensive reference work, where a specific directing group can be easily found, together with the transformations which have been carried out with it. Hence, the primary format of this review is schemes accompanied with a concise explanatory text, in which the directing groups are ordered in sections according to their chemical structure. The schemes feature typical substrates used, the products obtained as well as the required reaction conditions. Importantly, each example is commented on with respect to the most important positive features and drawbacks, on aspects such as selectivity, substrate scope, reaction conditions, directing group removal, and greenness. The targeted readership are both experts in the field of C-H functionalisation chemistry (to provide a comprehensive overview of the progress made in the last years) and, even more so, all organic chemists who want to introduce the C-H functionalisation way of thinking for a design of straightforward, efficient and step-economic synthetic routes towards molecules of interest to them. Accordingly, this review should be of particular interest also for scientists from industrial R&D sector. Hence, the overall goal of this review is to promote the application of C-H functionalisation reactions outside the research groups dedicated to method development and establishing it as a valuable reaction archetype in contemporary R&D, comparable to the role cross-coupling reactions play to date.

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Isoxazole – Wikipedia,
Isoxazole | C3H3NO – PubChem

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Degradation of pharmaceutical mixtures in aqueous solutions using UV/peracetic acid process: Kinetics, degradation pathways and comparison with UV/H2O2

This paper presents an evaluation of UV/PAA process for degradation of four pharmaceuticals venlafaxine (VEN), sulfamethoxazole (SFX), fluoxetine (FLU) and carbamazepine (CBZ) with comparison to UV/H2O2 process. The effectiveness of combining PAA and H2O2 at various proportions while irradiating with UVC were also evaluated. UVC/PAA (lambda = 254 nm) was effective in degrading all four pharmaceuticals and followed pseudo first-order kinetics. Increasing PAA dosage or UVC intensity resulted in a linear increase in pseudo-first order rate coefficient. Both PAA in dark conditions and UVA/PAA (lambda = 360 nm) were marginally effective to degrade SFX and ineffective to degrade VEN, CBZ and FLU; indicating the need for UVC irradiation for activation of PAA. For similar oxidant dosages of 50 mg/L UVC/H2O2 was found to be faster than UV/PAA for VEN, CBZ and FLU by 55%, 75% and 33%, respectively. Under similar conditions, SFX was degraded 24% faster by UV/PAA. Increase in the proportion of H2O2 to PAA in UVC/PAA/H2O2 improved kinetics of degradation compared to PAA alone. Tests on TOC were conducted to determine the amount of acetic acid that is released to water when treatment by UVC/PAA is conducted. Results demonstrated that 70% of PAA by mass was ultimately converted to acetic acid and remained in the treated solutions. Hydroxyl radical attack is hypothesized to be the main mechanism of degradation by UV/PAA as degradation intermediates identified for all the target pharmaceuticals coincided with by-products identified during UV/H2O2 process.

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Isoxazole – Wikipedia,
Isoxazole | C3H3NO – PubChem

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Interplay of thermochemistry and Structural Chemistry, the journal (volume 26, 2015, issues 3?4) and the discipline

The contents of issues 3 and 4 of Structural Chemistry from the calendar year 2015 are summarized in the present review. A brief thermochemical commentary and possible guidelines for future research are added to the summary of each paper.

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Isoxazole – Wikipedia,
Isoxazole | C3H3NO – PubChem

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SABRE: Chemical kinetics and spin dynamics of the formation of hyperpolarization

In this review, we present the physical principles of the SABRE (Signal Amplification By Reversible Exchange) method. SABRE is a promising hyperpolarization technique that enhances NMR signals by transferring spin order from parahydrogen (an isomer of the H2 molecule that is in a singlet nuclear spin state) to a substrate that is to be polarized. Spin order transfer takes place in a transient organometallic complex which binds both parahydrogen and substrate molecules; after dissociation of the SABRE complex, free hyperpolarized substrate molecules are accumulated in solution. An advantage of this method is that the substrate is not modified chemically, and its polarization can be regenerated multiple times by bubbling fresh parahydrogen through the solution. Thus, SABRE requires two key ingredients: (i) polarization transfer and (ii) chemical exchange of both parahydrogen and substrate. While there are several excellent reviews on applications of SABRE, the background of the method is discussed less frequently. In this review we aim to explain in detail how SABRE hyperpolarization is formed, focusing on key aspects of both spin dynamics and chemical kinetics, as well as on the interplay between them. Hence, we first cover the known spin order transfer methods applicable to SABRE ? cross-relaxation, coherent spin mixing at avoided level crossings, and coherence transfer ? and discuss their practical implementation for obtaining SABRE polarization in the most efficient way. Second, we introduce and explain the principle of SABRE hyperpolarization techniques that operate at ultralow (<1 muT), at low (1muT to 0.1 T) and at high (>0.1 T) magnetic fields. Finally, chemical aspects of SABRE are discussed in detail, including chemical systems that are amenable to SABRE and the exchange processes that are required for polarization formation. A theoretical treatment of the spin dynamics and their interplay with chemical kinetics is also presented. This review outlines known aspects of SABRE and provides guidelines for the design of new SABRE experiments, with the goal of solving practical problems of enhancing weak NMR signals.

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Reference£º
Isoxazole – Wikipedia,
Isoxazole | C3H3NO – PubChem